FastQ Screen
note
Screens a library of sequences in FastQ format against a set of sequence databases to see if the composition of the library matches with what you expect.
http://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/
The module creates a stacked bar plot showing, for each sample, the number of reads mapped to each of the screened organisms. Reads that align to more than one genome are grouped into a "Multiple Genomes" category, and unmapped reads into "No hits".
If any samples were run in bisulfite mode, an additional stacked bar plot breaks the reads down by methylation status.
File search patterns
fastq_screen:
fn: '*_screen.txt'